Countable PCR for DNA

PCR without the complexity.

Single-molecule DNA counting in a familiar PCR workflow—with fully automated data analysis and a broad dynamic range.

The new standard in PCR performance.

True quantification

Direct molecular counting enables precise measurements with consistently low CVs

Superior sensitivity

Resolve alleles down to 0.004% MAF while maintaining linear performance across a wide dynamic range

Effortless multiplexing

Rapidly develop multiplex assays, saving valuable time and resources

Seamless compatibility

Use existing probes, no assay redesign needed

Workflow

A workflow simple enough to be adopted by any lab.

01. Prepare

Prepare reaction

Load sample and reaction components to spin column.

02. Generate Matrix

Generate matrix

Centrifuge to isolate single molecules.

03. Amplify

Amplify targets

Perform PCR to amplify target signal.

04. Count

Count targets

Quantify using 3D light sheet imaging.

01. Prepare
02. Generate
03. Amplify
04. Count

01. Prepare

Prepare reaction

Load sample and reaction components to spin column.

02. Generate Matrix

Generate matrix

Centrifuge to isolate single molecules.

03. Amplify

Amplify targets

Perform PCR to amplify target signal.

04. Count

Count targets

Quantify using 3D light sheet imaging.

Compatible sample types

Cell free DNA

Tissue DNA

FFPE DNA

cDNA

Plasmids

Nucleosomal DNA

Genomic DNA, sheared

Genomic DNA, undigested

Crude cell lysate

Virus with capsids

Key specifications

The performance is Countable.

<1% CVs

High reproducibility

Up to 10 targets*

Multiplexing per reaction

1- 96 samples

per run

1-35 µL

sample input

up to 5kb

amplicon length

Up to 1 million

Target molecules counted

* Available on Countable 10. Contact us for service projects today.

Getting started is simple

Assay Design

Target amplification

Data Analysis

01. Assay design

Turn your ideas into results fast with better multiplexing and collaborative services.

Pre-designed Assays

Accelerate your research with pre-tested assays from the Countable Labs community.

Assay services

Partner with Countable Labs for collaborative guidance to make the most of your assays.

Universal Multiplexing

Develop and deploy multiplex assays in days, for 1/10th the cost of hydrolysis probes.

02. TARGET AMPLIFICATION

Prepare 30 million compartments for bias-free amplification with no dead volume.

Countable Matrix Reagents Kit

Turn a 50 µL reaction into 30 million compartments with a simple centrifugation step. Supports 1–35 µL sample input.

Countable PCR Mix Kit

Get high-fidelity amplification for accurate, precise target quantification, for both Universal Multiplex and hydrolysis probes.

Countable Matrix Consumables Kit

Prepare up to 96 samples per run using standard PCR tubes. Flexible throughput handling with barcoded stripes for data traceability.

03. Data analysis

Support GMP workflows with software that gives you direct, objective counts and built-in QC metrics.

Measure directly in the reaction tube for loss-free quantification via 3D light sheet imaging.

Plus, you get integrated software and local analysis with built-in QC metrics and 21 CFR Part 11 support, delivering objective, audit-ready results.

Countable 4

Easily analyze up to 4 targets simultaneously per sample, up to 96 samples.

Countable 10

Screen more targets than ever before — up to 10 colors — with clear, cross-talk free data.

Find out how Countable PCR transforms your work.

Frequently Asked Questions

Do you have pre-designed panels or assays?

Yes - we have Pre-designed Assays that include expert-verified protocols and performance data for commonly tested targets. We are continually adding new assays to our menu.

Do I need to redesign my assay for Countable PCR?

It is simple to transition existing hydrolysis probe-based assays to Countable PCR - your existing probes and primers can be used directly, although we do recommend including a probe additive to reduce background signal. Learn more here.

Does the Countable System automatically calculate absolute molecule counts?

Yes. The software automatically detects and counts target molecules from the 3D light sheet images for every sample and target. In addition, every run produces a QC report in a 21 CFR Part 11–compliant format, supporting GMP-ready traceability.

Which dyes are supported?

It will depend on which Countable System is used for analysis. You can see which dyes are supported on the instrument pages for Countable 4 and Countable 10.

Connect with a specialist to learn how Countable PCR transforms your workflow.